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DNA_Gen

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train · 51.8k rows

Unnamed: 0 int64 3.86M 5.68M	chrom stringclasses 19 values	start float64 11.7k 249M	end float64 12k 249M	TF stringclasses 31 values	score float64 1k 1k	cell_line stringclasses 1 value	Cell_Type stringclasses 1 value	Protein stringclasses 31 values	ID stringclasses 1 value	_merge stringclasses 1 value
3,864,642	chr1	633,850	634,190	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,643	chr1	1,064,193	1,064,533	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,644	chr1	1,462,559	1,462,899	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,645	chr1	1,630,262	1,630,638	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,646	chr1	1,778,834	1,779,224	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,647	chr1	1,907,492	1,907,673	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,649	chr1	3,676,935	3,677,348	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,650	chr1	3,775,953	3,776,333	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,651	chr1	4,027,519	4,027,859	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,652	chr1	6,785,039	6,785,435	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,653	chr1	7,478,940	7,479,280	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,654	chr1	8,167,180	8,167,632	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,655	chr1	8,283,332	8,283,559	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,656	chr1	8,427,624	8,427,856	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,657	chr1	8,643,613	8,643,953	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,658	chr1	9,037,438	9,037,778	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,659	chr1	9,069,637	9,069,977	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,660	chr1	9,080,384	9,080,644	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,661	chr1	9,275,528	9,275,896	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,662	chr1	9,413,175	9,413,373	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,663	chr1	9,426,290	9,426,740	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,664	chr1	9,626,154	9,626,494	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,666	chr1	10,968,506	10,968,843	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,667	chr1	10,985,874	10,986,130	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,671	chr1	12,040,410	12,040,739	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,673	chr1	12,434,210	12,434,550	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,674	chr1	13,731,099	13,731,222	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,676	chr1	15,696,922	15,697,262	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,677	chr1	15,788,951	15,789,291	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,679	chr1	16,017,521	16,017,711	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,680	chr1	19,315,602	19,315,942	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,681	chr1	21,294,398	21,294,738	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,682	chr1	22,712,544	22,712,698	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,683	chr1	23,525,025	23,525,365	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,684	chr1	23,525,835	23,526,099	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,685	chr1	23,528,644	23,528,984	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,686	chr1	23,554,756	23,555,096	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,687	chr1	23,562,229	23,562,628	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,689	chr1	23,735,391	23,735,546	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,691	chr1	24,190,966	24,191,353	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,692	chr1	24,727,545	24,727,885	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,696	chr1	25,447,658	25,447,914	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,697	chr1	25,472,623	25,472,863	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,698	chr1	25,676,055	25,676,333	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,700	chr1	26,838,883	26,839,131	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,701	chr1	26,960,365	26,960,621	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,703	chr1	27,357,554	27,357,810	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,704	chr1	27,416,492	27,416,832	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,705	chr1	27,632,488	27,632,702	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,706	chr1	27,656,145	27,656,443	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,707	chr1	27,658,477	27,658,817	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,709	chr1	27,875,208	27,875,506	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,710	chr1	28,297,834	28,298,174	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,714	chr1	30,754,748	30,755,059	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,715	chr1	30,765,215	30,765,555	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,716	chr1	31,477,044	31,477,312	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,717	chr1	31,891,364	31,891,704	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,719	chr1	31,944,280	31,944,751	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,720	chr1	32,248,251	32,248,683	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,721	chr1	32,250,014	32,250,354	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,722	chr1	32,627,679	32,627,807	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,723	chr1	32,817,145	32,817,541	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,724	chr1	32,818,880	32,819,136	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,726	chr1	33,342,245	33,342,650	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,727	chr1	34,360,683	34,360,900	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,728	chr1	34,532,094	34,532,434	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,729	chr1	35,735,827	35,736,038	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,730	chr1	36,349,273	36,349,613	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,731	chr1	37,288,884	37,289,099	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,732	chr1	37,931,709	37,932,089	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,733	chr1	38,815,870	38,816,354	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,736	chr1	39,272,350	39,272,585	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,737	chr1	39,646,196	39,646,592	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,738	chr1	39,845,569	39,845,990	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,739	chr1	39,995,974	39,996,314	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,740	chr1	40,668,862	40,669,111	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,741	chr1	41,003,670	41,004,065	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,742	chr1	41,353,823	41,354,047	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,743	chr1	41,728,676	41,729,103	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,744	chr1	41,751,446	41,751,662	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,745	chr1	41,882,024	41,882,413	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,750	chr1	44,485,645	44,486,044	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,752	chr1	44,810,415	44,810,755	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,753	chr1	48,093,736	48,094,022	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,756	chr1	57,138,049	57,138,305	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,757	chr1	58,573,809	58,574,015	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,761	chr1	66,283,759	66,284,042	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,762	chr1	66,350,210	66,350,421	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,763	chr1	66,402,307	66,402,541	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,764	chr1	67,333,090	67,333,354	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,765	chr1	67,760,070	67,760,286	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,767	chr1	75,726,955	75,727,244	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,768	chr1	79,193,435	79,193,707	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,769	chr1	81,598,626	81,598,932	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,770	chr1	82,152,626	82,152,890	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,771	chr1	84,973,908	84,974,029	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,773	chr1	92,975,653	92,975,839	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,774	chr1	93,704,164	93,704,420	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,775	chr1	101,407,690	101,407,979	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both
3,864,776	chr1	106,996,101	106,996,289	TCF12	1,000	GM12878	GM12878	TCF12	ENCODE	both

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Citation

Please cite our work using the bibtex below:

BibTeX:

@article{su2025language,
  title={Language Models for Controllable DNA Sequence Design},
  author={Su, Xingyu and Li, Xiner and Lin, Yuchao and Xie, Ziqian and Zhi, Degui and Ji, Shuiwang},
  journal={arXiv preprint arXiv:2507.19523},
  year={2025}
}

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Collection including xingyusu/DNA_Gen

ATGC_Gen

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2 items • Updated Jul 19, 2025

Paper for xingyusu/DNA_Gen

Language Models for Controllable DNA Sequence Design

Paper • 2507.19523 • Published Jul 19, 2025 • 1