metadata
dataset_info:
- config_name: Joung-diff-celltype-reserve-engineering-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_line
dtype: string
- name: cell_file
dtype: string
- name: marker_info
dtype: string
splits:
- name: train
num_bytes: 33565594
num_examples: 33234
- name: validation
num_bytes: 4192583
num_examples: 4150
- name: test
num_bytes: 4194868
num_examples: 4154
download_size: 940676
dataset_size: 41953045
- config_name: Joung-differentiated-pathway-activity-DE-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 6329175326
num_examples: 9988848
- name: validation
num_bytes: 790630510
num_examples: 1247202
- name: test
num_bytes: 790767518
num_examples: 1248450
download_size: 3409347532
dataset_size: 7910573354
- config_name: Joung-differentiated-pathway-activity-DE-languageQA-
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 6329175326
num_examples: 9988848
- name: validation
num_bytes: 790630510
num_examples: 1247202
- name: test
num_bytes: 790767518
num_examples: 1248450
download_size: 3409347532
dataset_size: 7910573354
- config_name: Joung-predict-mapped-cell-type-languageQA
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: TF_gene
dtype: string
- name: barcode
dtype: string
- name: cell_line
dtype: string
- name: differentiated_cell_file
dtype: string
splits:
- name: train
num_bytes: 9358413
num_examples: 3717
- name: validation
num_bytes: 1170214
num_examples: 465
- name: test
num_bytes: 1170734
num_examples: 465
download_size: 1847308
dataset_size: 11699361
- config_name: Joung_TF_deg_vs_ctl_languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 335378586
num_examples: 1396974
- name: validation
num_bytes: 41877830
num_examples: 174426
- name: test
num_bytes: 41918822
num_examples: 174600
download_size: 35173656
dataset_size: 419175238
- config_name: LINCS-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: category
dtype: string
- name: cell_line
dtype: string
- name: cmap_name
dtype: string
- name: sig_id
dtype: string
- name: gene
dtype: string
- name: data_source
dtype: string
- name: data_path
dtype: string
splits:
- name: train
num_bytes: 98526458
num_examples: 215603
- name: validation
num_bytes: 12197032
num_examples: 26648
- name: test
num_bytes: 12308638
num_examples: 26917
download_size: 32154111
dataset_size: 123032128
- config_name: PROGENy-pathways-languageQA
features:
- name: type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: gene
dtype: string
- name: pathways
list: string
- name: pathway
dtype: string
- name: top_n
dtype: float64
- name: genes
list: string
- name: weight
dtype: float64
- name: direction
dtype: string
- name: gene1
dtype: string
- name: weight1
dtype: float64
- name: gene2
dtype: string
- name: weight2
dtype: float64
- name: more_important
dtype: string
splits:
- name: train
num_bytes: 11113703
num_examples: 35345
- name: validation
num_bytes: 1373573
num_examples: 4369
- name: test
num_bytes: 1387304
num_examples: 4413
download_size: 2217948
dataset_size: 13874580
- config_name: Tahoe100M-de-language-six-celllines
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_line
dtype: string
splits:
- name: train
num_bytes: 13175516681
num_examples: 88011000
- name: validation
num_bytes: 1645109829
num_examples: 10989000
- name: test
num_bytes: 1646728308
num_examples: 11000000
download_size: 2513349270
dataset_size: 16467354818
- config_name: Xaira-cell-cycle-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_line
dtype: string
splits:
- name: train
num_bytes: 5690837
num_examples: 16002
- name: validation
num_bytes: 710494
num_examples: 1998
- name: test
num_bytes: 711102
num_examples: 2000
download_size: 1889335
dataset_size: 7112433
- config_name: Xaira-cell-line-origin-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_line
dtype: string
splits:
- name: train
num_bytes: 5525074
num_examples: 16002
- name: validation
num_bytes: 689789
num_examples: 1998
- name: test
num_bytes: 690426
num_examples: 2000
download_size: 1869473
dataset_size: 6905289
- config_name: Xaira-tissue-origin-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_line
dtype: string
splits:
- name: train
num_bytes: 6021136
num_examples: 16002
- name: validation
num_bytes: 751727
num_examples: 1998
- name: test
num_bytes: 752426
num_examples: 2000
download_size: 1894443
dataset_size: 7525289
- config_name: bioreason-MSigDB-languageQA
features:
- name: type
dtype: string
- name: collection
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
splits:
- name: train
num_bytes: 10771811
num_examples: 25389
- name: validation
num_bytes: 1288952
num_examples: 3139
- name: test
num_bytes: 1346545
num_examples: 3170
download_size: 6735159
dataset_size: 13407308
- config_name: celltypist_qa
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
splits:
- name: markers_to_celltype
num_bytes: 26565
num_examples: 196
- name: tissue_markers_to_celltype
num_bytes: 60615
num_examples: 433
download_size: 17939
dataset_size: 87180
- config_name: cellxgene-celltype-given-marker-genes
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: tissue
dtype: string
splits:
- name: train
num_bytes: 809200.2073170731
num_examples: 1836
- name: validation
num_bytes: 101370.39634146342
num_examples: 230
- name: test
num_bytes: 101370.39634146342
num_examples: 230
download_size: 335760
dataset_size: 1011941
- config_name: cellxgene-celltype-pathway-activity-DE-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type_1
dtype: string
- name: cell_type_2
dtype: string
splits:
- name: train
num_bytes: 9790494102
num_examples: 13711291
- name: validation
num_bytes: 8702682242
num_examples: 12189337
- name: test
num_bytes: 1087811860
num_examples: 1521954
download_size: 8070905777
dataset_size: 19580988204
- config_name: cellxgene-celltypeannotation_c2sformat
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: cell_file
dtype: string
- name: reasoning
dtype: string
splits:
- name: train
num_bytes: 168647214
num_examples: 196024
- name: validation
num_bytes: 21069610
num_examples: 24476
- name: test
num_bytes: 21075245
num_examples: 24500
download_size: 57099673
dataset_size: 210792069
- config_name: cellxgene-disease-pathway-activity-DE-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: data_path_normal
dtype: string
- name: data_path_disease
dtype: string
- name: dataset
dtype: string
splits:
- name: train
num_bytes: 155859624
num_examples: 201426
- name: validation
num_bytes: 138550151
num_examples: 179067
- name: test
num_bytes: 17309473
num_examples: 22359
download_size: 114728443
dataset_size: 311719248
- config_name: cellxgene-disease-state-prediction
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: disease_state
dtype: string
- name: tissue
dtype: string
- name: dataset_name
dtype: string
- name: data_path
dtype: string
splits:
- name: train
num_bytes: 59069905
num_examples: 52662
- name: validation
num_bytes: 7378526
num_examples: 6581
- name: test
num_bytes: 7390810
num_examples: 6586
download_size: 14538157
dataset_size: 73839241
- config_name: cellxgene-gene-regulation-disease-vs-normal
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: dataset
dtype: string
- name: data_path_disease
dtype: string
- name: data_path_normal
dtype: string
splits:
- name: train
num_bytes: 33473832
num_examples: 63586
- name: validation
num_bytes: 4177717
num_examples: 7940
- name: test
num_bytes: 4179144
num_examples: 7948
download_size: 1991294
dataset_size: 41830693
- config_name: cellxgene-tissue-given-marker-genes
features:
- name: question_type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
splits:
- name: train
num_bytes: 902575.2062588905
num_examples: 2249
- name: validation
num_bytes: 112771.73541963016
num_examples: 281
- name: test
num_bytes: 113173.05832147937
num_examples: 282
download_size: 376292
dataset_size: 1128520
- config_name: collectri-regulon-languageQA
features:
- name: type
dtype: string
- name: question
dtype: string
- name: answer
dtype: string
splits:
- name: train
num_bytes: 3005633
num_examples: 18426
- name: validation
num_bytes: 365737
num_examples: 2278
- name: test
num_bytes: 381681
num_examples: 2301
download_size: 1180414
dataset_size: 3753051
- config_name: depmap-integrative-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: category
dtype: string
- name: model_id
dtype: string
- name: cell_name
dtype: string
- name: gene
dtype: string
- name: is_dependency
dtype: float64
- name: moa
dtype: string
- name: drug
dtype: string
- name: is_sensitive
dtype: float64
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 813930545
num_examples: 241548
- name: validation
num_bytes: 100774421
num_examples: 29855
- name: test
num_bytes: 101657875
num_examples: 30156
download_size: 615461192
dataset_size: 1016362841
- config_name: msigdb-geneset-catalog
features:
- name: collection
dtype: string
- name: collection_name
dtype: string
- name: pathway
dtype: string
- name: genes
list: string
splits:
- name: train
num_bytes: 10670393
num_examples: 14742
download_size: 2331841
dataset_size: 10670393
- config_name: panglaodb_qa_markers_to_celltype
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
splits:
- name: train
num_bytes: 67890
num_examples: 429
download_size: 17763
dataset_size: 67890
- config_name: panglaodb_qa_species_organ_markers_to_celltype
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: cell_type
dtype: string
- name: organ
dtype: string
- name: species
dtype: string
splits:
- name: train
num_bytes: 71230
num_examples: 360
download_size: 19675
dataset_size: 71230
- config_name: pathways
features:
- name: pathway
dtype: string
- name: genes
list: string
- name: full_description
dtype: string
- name: brief_description
dtype: string
splits:
- name: pathways
num_bytes: 13211887
num_examples: 14743
download_size: 3489604
dataset_size: 13211887
- config_name: perturbQA-DE-Vision-languageQA
features:
- name: question
dtype: string
- name: answer
dtype: string
- name: dataset
dtype: string
- name: gene_target
dtype: string
- name: data_path
dtype: string
splits:
- name: train
num_bytes: 1847250602
num_examples: 2599518
- name: validation
num_bytes: 230723574
num_examples: 324575
- name: test
num_bytes: 230783751
num_examples: 324900
download_size: 775116383
dataset_size: 2308757927
- config_name: perturbqa_gse_gene_qa
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 403026.17004048586
num_examples: 666
- name: validation
num_bytes: 45385.82995951417
num_examples: 75
- name: test
num_bytes: 45385.82995951417
num_examples: 75
download_size: 85831
dataset_size: 493797.8299595142
- config_name: perturbqa_gse_pert_qa
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 322173.9409937888
num_examples: 579
- name: validation
num_bytes: 36168.05900621118
num_examples: 65
- name: test
num_bytes: 36168.05900621118
num_examples: 65
download_size: 67936
dataset_size: 394510.0590062112
- config_name: perturbqa_pert_de_qa
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 81183624.3
num_examples: 576288
- name: validation
num_bytes: 9020402.7
num_examples: 64032
- name: test
num_bytes: 9020402.7
num_examples: 64032
download_size: 15571780
dataset_size: 99224429.7
- config_name: perturbqa_pert_de_qa_train_test_split
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 73091291
num_examples: 519044
- name: test
num_bytes: 17112736
num_examples: 121276
- name: validation
num_bytes: 17112736
num_examples: 121276
download_size: 8942512
dataset_size: 107316763
- config_name: perturbqa_pert_dir_qa
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 14536287.20305006
num_examples: 88758
- name: validation
num_bytes: 1615306.7969499396
num_examples: 9863
- name: test
num_bytes: 1615306.7969499396
num_examples: 9863
download_size: 2294527
dataset_size: 17766900.796949938
- config_name: perturbqa_pert_dir_qa_train_test_split
features:
- name: question
dtype: string
- name: reasoning
dtype: string
- name: answer
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 13027313
num_examples: 79581
- name: test
num_bytes: 3124281
num_examples: 19040
- name: validation
num_bytes: 3124281
num_examples: 19040
download_size: 1340734
dataset_size: 19275875
- config_name: reasoning-scBaseCount-differential-Vision
features:
- name: srx_accession
dtype: large_string
- name: cell_id
dtype: large_string
- name: cell_type
dtype: large_string
- name: cell_file
dtype: large_string
- name: up_pathways
dtype: large_string
- name: down_pathways
dtype: large_string
splits:
- name: train_t_cell
num_bytes: 5528699142
num_examples: 611618
- name: validation_t_cell
num_bytes: 685738159
num_examples: 76150
- name: test_t_cell
num_bytes: 690478425
num_examples: 76273
- name: train_basal_cell
num_bytes: 21919177049
num_examples: 607780
- name: train_erythrocyte
num_bytes: 21641476065
num_examples: 2529125
- name: validation_basal_cell
num_bytes: 2738902470
num_examples: 75994
- name: test_basal_cell
num_bytes: 2723887679
num_examples: 75504
- name: train_endothelial_cell
num_bytes: 28628130327
num_examples: 866509
- name: validation_endothelial_cell
num_bytes: 3575350492
num_examples: 108132
- name: train_classical_monocyte
num_bytes: 30328918893
num_examples: 875492
- name: test_endothelial_cell
num_bytes: 3556056459
num_examples: 107554
- name: validation_classical_monocyte
num_bytes: 3795435268
num_examples: 109725
- name: test_classical_monocyte
num_bytes: 3769832277
num_examples: 108891
- name: train_luminal_epithelial_cell_of_mammary_gland
num_bytes: 17896810322
num_examples: 476364
- name: train_neutrophil
num_bytes: 8472039309
num_examples: 465531
- name: validation_luminal_epithelial_cell_of_mammary_gland
num_bytes: 2225522965
num_examples: 59332
- name: validation_neutrophil
num_bytes: 1051817837
num_examples: 57875
- name: test_neutrophil
num_bytes: 1051631570
num_examples: 57795
- name: test_luminal_epithelial_cell_of_mammary_gland
num_bytes: 2230202830
num_examples: 59339
- name: train_natural_killer_cell
num_bytes: 17180897285
num_examples: 2227459
- name: validation_natural_killer_cell
num_bytes: 2147613433
num_examples: 278129
- name: test_natural_killer_cell
num_bytes: 2145512544
num_examples: 278509
- name: train_smooth_muscle_cell
num_bytes: 7792581092
num_examples: 464992
- name: validation_smooth_muscle_cell
num_bytes: 971331019
num_examples: 58138
- name: test_smooth_muscle_cell
num_bytes: 965978169
num_examples: 57706
- name: train_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
num_bytes: 26656119470
num_examples: 1010323
- name: validation_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
num_bytes: 3325577221
num_examples: 126066
- name: test_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
num_bytes: 3309775607
num_examples: 125332
- name: train_plasma_cell
num_bytes: 18909960036
num_examples: 2441845
- name: validation_plasma_cell
num_bytes: 2370501404
num_examples: 305399
- name: test_plasma_cell
num_bytes: 2359040086
num_examples: 304708
download_size: 88180443100
dataset_size: 250644994904
- config_name: reasoning_nadig_replogle
features:
- name: gene_target
dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: up_pathways
list: string
- name: down_pathways
list: string
- name: unchanged_pathways
list: string
- name: experiment
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 48606335
num_examples: 959
- name: test
num_bytes: 63919601
num_examples: 1053
download_size: 4896374
dataset_size: 112525936
- config_name: reasoning_nadig_replogle_SEPARATED_PATHWAYS
features:
- name: gene_target
dtype: string
- name: protein_target
dtype: string
- name: cell_type
dtype: string
- name: tissue_type
dtype: string
- name: pathway_name
dtype: string
- name: pathway_change
dtype: string
- name: pathway_score
dtype: float64
- name: experiment
dtype: string
- name: cell_file
dtype: string
splits:
- name: train
num_bytes: 282231252
num_examples: 1122415
- name: test
num_bytes: 371936771
num_examples: 1476786
download_size: 28261190
dataset_size: 654168023
configs:
- config_name: Joung-diff-celltype-reserve-engineering-languageQA
data_files:
- split: train
path: Joung-diff-celltype-reserve-engineering-languageQA/train-*
- split: validation
path: Joung-diff-celltype-reserve-engineering-languageQA/validation-*
- split: test
path: Joung-diff-celltype-reserve-engineering-languageQA/test-*
- config_name: Joung-differentiated-pathway-activity-DE-languageQA
data_files:
- split: train
path: Joung-differentiated-pathway-activity-DE-languageQA/train-*
- split: validation
path: Joung-differentiated-pathway-activity-DE-languageQA/validation-*
- split: test
path: Joung-differentiated-pathway-activity-DE-languageQA/test-*
- config_name: Joung-differentiated-pathway-activity-DE-languageQA-
data_files:
- split: train
path: Joung-differentiated-pathway-activity-DE-languageQA-/train-*
- split: validation
path: Joung-differentiated-pathway-activity-DE-languageQA-/validation-*
- split: test
path: Joung-differentiated-pathway-activity-DE-languageQA-/test-*
- config_name: Joung-predict-mapped-cell-type-languageQA
data_files:
- split: train
path: Joung-predict-mapped-cell-type-languageQA/train-*
- split: validation
path: Joung-predict-mapped-cell-type-languageQA/validation-*
- split: test
path: Joung-predict-mapped-cell-type-languageQA/test-*
- config_name: Joung_TF_deg_vs_ctl_languageQA
data_files:
- split: train
path: Joung_TF_deg_vs_ctl_languageQA/train-*
- split: validation
path: Joung_TF_deg_vs_ctl_languageQA/validation-*
- split: test
path: Joung_TF_deg_vs_ctl_languageQA/test-*
- config_name: LINCS-languageQA
data_files:
- split: train
path: LINCS-languageQA/train-*
- split: validation
path: LINCS-languageQA/validation-*
- split: test
path: LINCS-languageQA/test-*
- config_name: PROGENy-pathways-languageQA
data_files:
- split: train
path: PROGENy-pathways-languageQA/train-*
- split: validation
path: PROGENy-pathways-languageQA/validation-*
- split: test
path: PROGENy-pathways-languageQA/test-*
- config_name: Tahoe100M-de-language-six-celllines
data_files:
- split: train
path: Tahoe100M-de-language-six-celllines/train-*
- split: validation
path: Tahoe100M-de-language-six-celllines/validation-*
- split: test
path: Tahoe100M-de-language-six-celllines/test-*
- config_name: Xaira-cell-cycle-languageQA
data_files:
- split: train
path: Xaira-cell-cycle-languageQA/train-*
- split: validation
path: Xaira-cell-cycle-languageQA/validation-*
- split: test
path: Xaira-cell-cycle-languageQA/test-*
- config_name: Xaira-cell-line-origin-languageQA
data_files:
- split: train
path: Xaira-cell-line-origin-languageQA/train-*
- split: validation
path: Xaira-cell-line-origin-languageQA/validation-*
- split: test
path: Xaira-cell-line-origin-languageQA/test-*
- config_name: Xaira-tissue-origin-languageQA
data_files:
- split: train
path: Xaira-tissue-origin-languageQA/train-*
- split: validation
path: Xaira-tissue-origin-languageQA/validation-*
- split: test
path: Xaira-tissue-origin-languageQA/test-*
- config_name: bioreason-MSigDB-languageQA
data_files:
- split: train
path: bioreason-MSigDB-languageQA/train-*
- split: validation
path: bioreason-MSigDB-languageQA/validation-*
- split: test
path: bioreason-MSigDB-languageQA/test-*
- config_name: celltypist_qa
data_files:
- split: markers_to_celltype
path: celltypist_qa/markers_to_celltype-*
- split: tissue_markers_to_celltype
path: celltypist_qa/tissue_markers_to_celltype-*
- config_name: cellxgene-celltype-given-marker-genes
data_files:
- split: train
path: cellxgene-celltype-given-marker-genes/train-*
- split: validation
path: cellxgene-celltype-given-marker-genes/validation-*
- split: test
path: cellxgene-celltype-given-marker-genes/test-*
- config_name: cellxgene-celltype-pathway-activity-DE-languageQA
data_files:
- split: train
path: cellxgene-celltype-pathway-activity-DE-languageQA/train-*
- split: validation
path: cellxgene-celltype-pathway-activity-DE-languageQA/validation-*
- split: test
path: cellxgene-celltype-pathway-activity-DE-languageQA/test-*
- config_name: cellxgene-celltypeannotation_c2sformat
data_files:
- split: train
path: cellxgene-celltypeannotation_c2sformat/train-*
- split: validation
path: cellxgene-celltypeannotation_c2sformat/validation-*
- split: test
path: cellxgene-celltypeannotation_c2sformat/test-*
- config_name: cellxgene-disease-pathway-activity-DE-languageQA
data_files:
- split: train
path: cellxgene-disease-pathway-activity-DE-languageQA/train-*
- split: validation
path: cellxgene-disease-pathway-activity-DE-languageQA/validation-*
- split: test
path: cellxgene-disease-pathway-activity-DE-languageQA/test-*
- config_name: cellxgene-disease-state-prediction
data_files:
- split: train
path: cellxgene-disease-state-prediction/train-*
- split: validation
path: cellxgene-disease-state-prediction/validation-*
- split: test
path: cellxgene-disease-state-prediction/test-*
- config_name: cellxgene-gene-regulation-disease-vs-normal
data_files:
- split: train
path: cellxgene-gene-regulation-disease-vs-normal/train-*
- split: validation
path: cellxgene-gene-regulation-disease-vs-normal/validation-*
- split: test
path: cellxgene-gene-regulation-disease-vs-normal/test-*
- config_name: cellxgene-tissue-given-marker-genes
data_files:
- split: train
path: cellxgene-tissue-given-marker-genes/train-*
- split: validation
path: cellxgene-tissue-given-marker-genes/validation-*
- split: test
path: cellxgene-tissue-given-marker-genes/test-*
- config_name: collectri-regulon-languageQA
data_files:
- split: train
path: collectri-regulon-languageQA/train-*
- split: validation
path: collectri-regulon-languageQA/validation-*
- split: test
path: collectri-regulon-languageQA/test-*
- config_name: depmap-integrative-languageQA
data_files:
- split: train
path: depmap-integrative-languageQA/train-*
- split: validation
path: depmap-integrative-languageQA/validation-*
- split: test
path: depmap-integrative-languageQA/test-*
- config_name: msigdb-geneset-catalog
data_files:
- split: train
path: msigdb-geneset-catalog/train-*
- config_name: panglaodb_qa_markers_to_celltype
data_files:
- split: train
path: panglaodb_qa_markers_to_celltype/train-*
- config_name: panglaodb_qa_species_organ_markers_to_celltype
data_files:
- split: train
path: panglaodb_qa_species_organ_markers_to_celltype/train-*
- config_name: pathways
data_files:
- split: pathways
path: pathways/pathways-*
- config_name: perturbQA-DE-Vision-languageQA
data_files:
- split: train
path: perturbQA-DE-Vision-languageQA/train-*
- split: validation
path: perturbQA-DE-Vision-languageQA/validation-*
- split: test
path: perturbQA-DE-Vision-languageQA/test-*
- config_name: perturbqa_gse_gene_qa
data_files:
- split: train
path: perturbqa_gse_gene_qa/train-*
- split: validation
path: perturbqa_gse_gene_qa/validation-*
- split: test
path: perturbqa_gse_gene_qa/test-*
- config_name: perturbqa_gse_pert_qa
data_files:
- split: train
path: perturbqa_gse_pert_qa/train-*
- split: validation
path: perturbqa_gse_pert_qa/validation-*
- split: test
path: perturbqa_gse_pert_qa/test-*
- config_name: perturbqa_pert_de_qa
data_files:
- split: train
path: perturbqa_pert_de_qa/train-*
- split: validation
path: perturbqa_pert_de_qa/validation-*
- split: test
path: perturbqa_pert_de_qa/test-*
- config_name: perturbqa_pert_de_qa_train_test_split
data_files:
- split: train
path: perturbqa_pert_de_qa_train_test_split/train-*
- split: test
path: perturbqa_pert_de_qa_train_test_split/test-*
- split: validation
path: perturbqa_pert_de_qa_train_test_split/validation-*
- config_name: perturbqa_pert_dir_qa
data_files:
- split: train
path: perturbqa_pert_dir_qa/train-*
- split: validation
path: perturbqa_pert_dir_qa/validation-*
- split: test
path: perturbqa_pert_dir_qa/test-*
- config_name: perturbqa_pert_dir_qa_train_test_split
data_files:
- split: train
path: perturbqa_pert_dir_qa_train_test_split/train-*
- split: test
path: perturbqa_pert_dir_qa_train_test_split/test-*
- split: validation
path: perturbqa_pert_dir_qa_train_test_split/validation-*
- config_name: reasoning-scBaseCount-differential-Vision
data_files:
- split: train_t_cell
path: reasoning-scBaseCount-differential-Vision/train_t_cell-*
- split: validation_t_cell
path: reasoning-scBaseCount-differential-Vision/validation_t_cell-*
- split: test_t_cell
path: reasoning-scBaseCount-differential-Vision/test_t_cell-*
- split: train_basal_cell
path: reasoning-scBaseCount-differential-Vision/train_basal_cell-*
- split: train_erythrocyte
path: reasoning-scBaseCount-differential-Vision/train_erythrocyte-*
- split: validation_basal_cell
path: reasoning-scBaseCount-differential-Vision/validation_basal_cell-*
- split: test_basal_cell
path: reasoning-scBaseCount-differential-Vision/test_basal_cell-*
- split: train_endothelial_cell
path: reasoning-scBaseCount-differential-Vision/train_endothelial_cell-*
- split: validation_endothelial_cell
path: >-
reasoning-scBaseCount-differential-Vision/validation_endothelial_cell-*
- split: train_classical_monocyte
path: reasoning-scBaseCount-differential-Vision/train_classical_monocyte-*
- split: test_endothelial_cell
path: reasoning-scBaseCount-differential-Vision/test_endothelial_cell-*
- split: validation_classical_monocyte
path: >-
reasoning-scBaseCount-differential-Vision/validation_classical_monocyte-*
- split: test_classical_monocyte
path: reasoning-scBaseCount-differential-Vision/test_classical_monocyte-*
- split: train_luminal_epithelial_cell_of_mammary_gland
path: >-
reasoning-scBaseCount-differential-Vision/train_luminal_epithelial_cell_of_mammary_gland-*
- split: train_neutrophil
path: reasoning-scBaseCount-differential-Vision/train_neutrophil-*
- split: validation_luminal_epithelial_cell_of_mammary_gland
path: >-
reasoning-scBaseCount-differential-Vision/validation_luminal_epithelial_cell_of_mammary_gland-*
- split: validation_neutrophil
path: reasoning-scBaseCount-differential-Vision/validation_neutrophil-*
- split: test_neutrophil
path: reasoning-scBaseCount-differential-Vision/test_neutrophil-*
- split: test_luminal_epithelial_cell_of_mammary_gland
path: >-
reasoning-scBaseCount-differential-Vision/test_luminal_epithelial_cell_of_mammary_gland-*
- split: train_natural_killer_cell
path: reasoning-scBaseCount-differential-Vision/train_natural_killer_cell-*
- split: validation_natural_killer_cell
path: >-
reasoning-scBaseCount-differential-Vision/validation_natural_killer_cell-*
- split: test_natural_killer_cell
path: reasoning-scBaseCount-differential-Vision/test_natural_killer_cell-*
- split: train_smooth_muscle_cell
path: reasoning-scBaseCount-differential-Vision/train_smooth_muscle_cell-*
- split: validation_smooth_muscle_cell
path: >-
reasoning-scBaseCount-differential-Vision/validation_smooth_muscle_cell-*
- split: test_smooth_muscle_cell
path: reasoning-scBaseCount-differential-Vision/test_smooth_muscle_cell-*
- split: train_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
path: >-
reasoning-scBaseCount-differential-Vision/train_naive_thymus_derived_cd4_positive__alpha_beta_t_cell-*
- split: validation_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
path: >-
reasoning-scBaseCount-differential-Vision/validation_naive_thymus_derived_cd4_positive__alpha_beta_t_cell-*
- split: test_naive_thymus_derived_cd4_positive__alpha_beta_t_cell
path: >-
reasoning-scBaseCount-differential-Vision/test_naive_thymus_derived_cd4_positive__alpha_beta_t_cell-*
- split: train_plasma_cell
path: reasoning-scBaseCount-differential-Vision/train_plasma_cell-*
- split: validation_plasma_cell
path: reasoning-scBaseCount-differential-Vision/validation_plasma_cell-*
- split: test_plasma_cell
path: reasoning-scBaseCount-differential-Vision/test_plasma_cell-*
- config_name: reasoning_nadig_replogle
data_files:
- split: train
path: reasoning_nadig_replogle/train-*
- split: test
path: reasoning_nadig_replogle/test-*
- config_name: reasoning_nadig_replogle_SEPARATED_PATHWAYS
data_files:
- split: train
path: reasoning_nadig_replogle_SEPARATED_PATHWAYS/train-*
- split: test
path: reasoning_nadig_replogle_SEPARATED_PATHWAYS/test-*