PepGLAD / data /resample.py
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添加PepGLAD初始代码
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#!/usr/bin/python
# -*- coding:utf-8 -*-
import numpy as np
class ClusterResampler:
def __init__(self, cluster_path: str) -> None:
idx2prob = []
with open(cluster_path, 'r') as fin:
for line in fin:
cluster_n_member = int(line.strip().split('\t')[-1])
idx2prob.append(1 / cluster_n_member)
total = sum(idx2prob)
idx2prob = [p / total for p in idx2prob]
self.idx2prob = np.array(idx2prob)
def __call__(self, n_sample:int, replace: bool=False):
idxs = np.random.choice(len(self.idx2prob), size=n_sample, replace=replace, p=self.idx2prob)
return idxs